Virus Expression Database
Submitted by Caroline Friedel (Ludwig-Maximilians-Universität München, Germany) on Jun 27 2017
Platform: ngs – Illumina NextSeq 500 (Homo sapiens)
Pubmed: 29579120
Summary Primary human foreskin fibroblasts (HFF) were infected with wild-type simplex virus 1 (HSV-1) strain 17 at a multiplicity of infection (MOI) of 10. Subcellular RNA fractions including total RNA, cytoplasmic RNA, nucleoplasmic RNA and chromatin-associated RNA were prepared and subjected to RNA-seq
| ID | Title | Cell Type | Timepoint | Reported Virus | Virus Species | Exclusion Reason |
|---|---|---|---|---|---|---|
| GSM2687371 | Total RNA, Mock, Rep 1 | foreskin fibroblast cell line  |
mock | Uninfected | ||
| GSM2687372 | Cytoplasmic RNA, Mock, Rep 1 | foreskin fibroblast cell line |
mock | Uninfected | Extra interventions cytoplasmic RNA |
|
| GSM2687373 | Nucleoplasmic RNA, Mock, Rep 1 | foreskin fibroblast cell line |
mock | Uninfected | Extra interventions nucleoplasmic RNA |
|
| GSM2687374 | Chromatin-associated RNA, Mock, Rep 1 | foreskin fibroblast cell line |
mock | Uninfected | Extra interventions chromatin-associated RNA |
|
| GSM2687375 | Total RNA, HSV-1 8h p.i., Rep 1 | foreskin fibroblast cell line |
8 hrs | HSV-1 | Human alphaherpesvirus 1 | |
| GSM2687376 | Cytoplasmic RNA, HSV-1 8h p.i., Rep 1 | foreskin fibroblast cell line |
8 hrs | HSV-1 | Human alphaherpesvirus 1 | Extra interventions cytoplasmic RNA |
| GSM2687377 | Nucleoplasmic RNA, HSV-1 8h p.i., Rep 1 | foreskin fibroblast cell line |
8 hrs | HSV-1 | Human alphaherpesvirus 1 | Extra interventions nucleoplasmic RNA |
| GSM2687378 | Chromatin-associated RNA, HSV-1 8h p.i., Rep 1 | foreskin fibroblast cell line |
8 hrs | HSV-1 | Human alphaherpesvirus 1 | Extra interventions chromatin-associated RNA |
| GSM2687379 | Total RNA, Mock, Rep 2 | foreskin fibroblast cell line |
mock | Uninfected | ||
| GSM2687380 | Total RNA, HSV-1 8h p.i., Rep 2 | foreskin fibroblast cell line |
8 hrs | HSV-1 | Human alphaherpesvirus 1 | |
| GSM2687381 | Cytoplasmic RNA, Mock, Rep 2 | foreskin fibroblast cell line |
mock | Uninfected | Extra interventions cytoplasmic RNA |
|
| GSM2687382 | Cytoplasmic RNA, HSV-1 8h p.i., Rep 2 | foreskin fibroblast cell line |
8 hrs | HSV-1 | Human alphaherpesvirus 1 | Extra interventions cytoplasmic RNA |
| GSM2687383 | Nucleoplasmic RNA, Mock, Rep 2 | foreskin fibroblast cell line |
mock | Uninfected | Extra interventions nucleoplasmic RNA |
|
| GSM2687384 | Nucleoplasmic RNA, HSV-1 8h p.i., Rep 2 | foreskin fibroblast cell line |
8 hrs | HSV-1 | Human alphaherpesvirus 1 | Extra interventions nucleoplasmic RNA |
| GSM2687385 | Chromatin-associated RNA, Mock, Rep 2 | foreskin fibroblast cell line |
mock | Uninfected | Extra interventions chromatin-associated RNA |
|
| GSM2687386 | Chromatin-associated RNA, HSV-1 8h p.i., Rep 2 | foreskin fibroblast cell line |
8 hrs | HSV-1 | Human alphaherpesvirus 1 | Extra interventions chromatin-associated RNA |