Virus Expression Database

GSE100576

Subcellular RNA fractions of HSV-1 infected primary human fibroblasts

Submitted by Caroline Friedel (Ludwig-Maximilians-Universität München, Germany) on Jun 27 2017

Platform: ngs – Illumina NextSeq 500 (Homo sapiens)

Pubmed: 29579120

Summary Primary human foreskin fibroblasts (HFF) were infected with wild-type simplex virus 1 (HSV-1) strain 17 at a multiplicity of infection (MOI) of 10. Subcellular RNA fractions including total RNA, cytoplasmic RNA, nucleoplasmic RNA and chromatin-associated RNA were prepared and subjected to RNA-seq

16 Samples

ID Title Cell Type Timepoint Reported Virus Virus Species Exclusion Reason
GSM2687371 Total RNA, Mock, Rep 1 foreskin fibroblast cell line  mock Uninfected
GSM2687372 Cytoplasmic RNA, Mock, Rep 1 foreskin fibroblast cell line  mock Uninfected Extra interventions
cytoplasmic RNA
GSM2687373 Nucleoplasmic RNA, Mock, Rep 1 foreskin fibroblast cell line  mock Uninfected Extra interventions
nucleoplasmic RNA
GSM2687374 Chromatin-associated RNA, Mock, Rep 1 foreskin fibroblast cell line  mock Uninfected Extra interventions
chromatin-associated RNA
GSM2687375 Total RNA, HSV-1 8h p.i., Rep 1 foreskin fibroblast cell line  8 hrs HSV-1 Human alphaherpesvirus 1
GSM2687376 Cytoplasmic RNA, HSV-1 8h p.i., Rep 1 foreskin fibroblast cell line  8 hrs HSV-1 Human alphaherpesvirus 1 Extra interventions
cytoplasmic RNA
GSM2687377 Nucleoplasmic RNA, HSV-1 8h p.i., Rep 1 foreskin fibroblast cell line  8 hrs HSV-1 Human alphaherpesvirus 1 Extra interventions
nucleoplasmic RNA
GSM2687378 Chromatin-associated RNA, HSV-1 8h p.i., Rep 1 foreskin fibroblast cell line  8 hrs HSV-1 Human alphaherpesvirus 1 Extra interventions
chromatin-associated RNA
GSM2687379 Total RNA, Mock, Rep 2 foreskin fibroblast cell line  mock Uninfected
GSM2687380 Total RNA, HSV-1 8h p.i., Rep 2 foreskin fibroblast cell line  8 hrs HSV-1 Human alphaherpesvirus 1
GSM2687381 Cytoplasmic RNA, Mock, Rep 2 foreskin fibroblast cell line  mock Uninfected Extra interventions
cytoplasmic RNA
GSM2687382 Cytoplasmic RNA, HSV-1 8h p.i., Rep 2 foreskin fibroblast cell line  8 hrs HSV-1 Human alphaherpesvirus 1 Extra interventions
cytoplasmic RNA
GSM2687383 Nucleoplasmic RNA, Mock, Rep 2 foreskin fibroblast cell line  mock Uninfected Extra interventions
nucleoplasmic RNA
GSM2687384 Nucleoplasmic RNA, HSV-1 8h p.i., Rep 2 foreskin fibroblast cell line  8 hrs HSV-1 Human alphaherpesvirus 1 Extra interventions
nucleoplasmic RNA
GSM2687385 Chromatin-associated RNA, Mock, Rep 2 foreskin fibroblast cell line  mock Uninfected Extra interventions
chromatin-associated RNA
GSM2687386 Chromatin-associated RNA, HSV-1 8h p.i., Rep 2 foreskin fibroblast cell line  8 hrs HSV-1 Human alphaherpesvirus 1 Extra interventions
chromatin-associated RNA