Virus Expression Database
Submitted by Tariq Rana (San Diego, USA) on Apr 25 2018
Platform: ngs – Illumina NextSeq 500 (Homo sapiens)
Pubmed: 31216479
Summary RNA-seq was utilized to characterize the transcriptome of human neural stem cells infected with Zika virus strains MR766 and Paraiba at MOI 1. Coding and noncoding genes were analyzed to determine transcriptional changes 3 days post-infection.
| ID | Title | Cell Type | Timepoint | Reported Virus | Virus Species | Exclusion Reason |
|---|---|---|---|---|---|---|
| GSM3110545 | NT rep1 (RNA-Seq) | neural stem cell  |
3 days | mock | Uninfected | |
| GSM3110546 | NT rep2 (RNA-Seq) | neural stem cell |
3 days | mock | Uninfected | |
| GSM3110547 | MR766 rep1 (RNA-Seq) | neural stem cell |
3 days | Zika MR766 | Zika virus | |
| GSM3110548 | MR766 rep2 (RNA-Seq) | neural stem cell |
3 days | Zika MR766 | Zika virus | |
| GSM3110549 | Paraiba rep1 (RNA-Seq) | neural stem cell |
3 days | Zika Paraiba | Zika virus | |
| GSM3110550 | Paraiba rep2 (RNA-Seq) | neural stem cell |
3 days | Zika Paraiba | Zika virus |