Virus Expression Database
Submitted by Todd Bradley (Duke University Medical Center, USA) on Jun 07 2018
Platform: ngs – Illumina HiSeq 2500 (Homo sapiens)
Pubmed: 30270043
Summary We sought to determine differences in transcript expression between a cohort of HIV-infected individuals that either developed broadly neutralizing antibodies (bnAb) or did not develop them (control). With the ultimate goal to identify transcripts that are associated with the development of bnAbs that would identify novel pathways that could be targeted in future vaccine strategies to increase the frequency of individuals that develop bnAbs against HIV. Using this approach we identified that Rab11 recycling endosomes, particularly in dysfunctional natural killer cells are associated with the development of HIV-1 bnAbs.
| ID | Title | Cell Type | Timepoint | Reported Virus | Virus Species | Exclusion Reason |
|---|---|---|---|---|---|---|
| GSM3178391 | BNab_DDT178LQ | peripheral blood mononuclear cell  |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178394 | BNab_BDT17BWJ | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178397 | BNab_GDT060M2 | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178400 | BNab_GDT06P5X | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178402 | BNab_CDT052MR | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178403 | BNab_DDT06FRH | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178405 | BNab_EDTO6G1N | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178407 | BNab_GDT052NL | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178410 | BNab_EDT07ZLT | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178411 | BNab_DDT052NJ | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178414 | BNab_GDT06147 | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178415 | BNab_JDT06P5K | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178416 | BNab_GDT06P5N | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178417 | BNab_KDT0735T | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178420 | BNab_JDT0735X | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178421 | BNab_HDT06FP9 | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178422 | BNab_KDT0736S | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178423 | BNab_GDT0736P | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178424 | BNab_BDT07ZNY | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178426 | BNab_EDT07ZSG | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178429 | BNab_BDT06152 | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178430 | BNab_ADT0614R | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178434 | BNab_GDT033GG | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178437 | BNab_ADT06P73 | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178439 | BNab_KDT0614Y | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178444 | BNab_BDT0615B | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178449 | BNab_BDTO6FXR | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178450 | BNab_EDT06FYR | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178451 | BNab_BDT06FQY | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178454 | BNab_HDT06PC2 | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178456 | BNab_HDT06PCB | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178460 | BNab_CDT052KF | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178461 | BNab_FDT052K3 | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178464 | BNab_BDT0613Q | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178465 | BNab_DDT052KR | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178466 | BNab_ADT06JT1 | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178468 | BNab_KDT033RB | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178469 | BNab_CDT033GS | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178470 | BNab_FDT07ZKM | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178471 | BNab_DDT072V1 | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178472 | BNab_EDT052L0 | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178473 | BNab_JDT052KT | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178474 | BNab_DDT052LD | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178477 | BNab_HDT00QLN | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178479 | BNab_BDT060P4 | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 | |
| GSM3178481 | BNab_KDT060P8 | peripheral blood mononuclear cell |
persistent | HIV-1 | Human immunodeficiency virus 1 |