GSE120891

Differential expression of genes in fibroblasts and epithelial cells infected with dsDNA viruses

Submitted by Thomas Shenk (Princeton University, USA) on Oct 05 2018

Platform: ngs – Illumina HiSeq 2000 (Homo sapiens)

Pubmed: 30626867

Summary We studied changes in a whole transcriptome during dsDNA virus infection.

30 Samples

ID	Title	Cell Type	Timepoint	Reported Virus	Virus Species	Exclusion Reason
GSM3417898	mock infected fibroblasts Mock_MRC5_1	lung fibroblast cell line  [MRC-5 ]	48 hrs	mock	Uninfected
GSM3417899	mock infected fibroblasts Mock_MRC5_2	lung fibroblast cell line  [MRC-5 ]	48 hrs	mock	Uninfected
GSM3417900	CMV infected fibroblasts TB40/E_MRC5_1	lung fibroblast cell line  [MRC-5 ]	48 hrs	CMV/TB40	Human betaherpesvirus 5
GSM3417901	CMV infected fibroblasts TB40/E_MRC5_2	lung fibroblast cell line  [MRC-5 ]	48 hrs	CMV/TB40	Human betaherpesvirus 5
GSM3417902	CMV infected fibroblasts FIX_MRC5_1	lung fibroblast cell line  [MRC-5 ]	48 hrs	CMV/FIX	Human betaherpesvirus 5
GSM3417903	CMV infected fibroblasts FIX_MRC5_2	lung fibroblast cell line  [MRC-5 ]	48 hrs	CMV/FIX	Human betaherpesvirus 5
GSM3417904	CMV infected fibroblasts AD169_MRC5_1	lung fibroblast cell line  [MRC-5 ]	48 hrs	CMV/AD169	Human betaherpesvirus 5
GSM3417905	CMV infected fibroblasts AD169_MRC5_2	lung fibroblast cell line  [MRC-5 ]	48 hrs	CMV/AD169	Human betaherpesvirus 5
GSM3417906	CMV infected fibroblasts TB40e_MRC5_1	lung fibroblast cell line  [MRC-5 ]	48 hrs	CMV/TB40e	Human betaherpesvirus 5
GSM3417907	CMV infected fibroblasts TB40e_MRC5_2	lung fibroblast cell line  [MRC-5 ]	48 hrs	CMV/TB40e	Human betaherpesvirus 5
GSM3417908	mock infected retinal pigment epithelial cells Mock_ARPE19_1	retinal pigment epithelium cell line  [ARPE-19 ]	48 hrs	mock	Uninfected
GSM3417909	mock infected retinal pigment epithelial cells Mock_ARPE19_2	retinal pigment epithelium cell line  [ARPE-19 ]	48 hrs	mock	Uninfected
GSM3417910	CMV infected retinal pigment epithelial cells TB40e_ARPE19_1	retinal pigment epithelium cell line  [ARPE-19 ]	48 hrs	CMV/TB40e	Human betaherpesvirus 5
GSM3417911	CMV infected retinal pigment epithelial cells TB40e_ARPE19_2	retinal pigment epithelium cell line  [ARPE-19 ]	48 hrs	CMV/TB40e	Human betaherpesvirus 5
GSM3417912	mock infected fibroblasts Mock_9h_1	lung fibroblast cell line  [MRC-5 ]	9 hrs	mock	Uninfected
GSM3417913	mock infected fibroblasts Mock_9h_2	lung fibroblast cell line  [MRC-5 ]	9 hrs	mock	Uninfected
GSM3417914	HSV infected fibroblasts HSV_1	lung fibroblast cell line  [MRC-5 ]	9 hrs	HSV1/strain F	Human alphaherpesvirus 1	Data failed QC pseudoaligned_reads is 1265765 (low number of usable reads)
GSM3417915	HSV infected fibroblasts HSV_2	lung fibroblast cell line  [MRC-5 ]	9 hrs	HSV1/strain F	Human alphaherpesvirus 1
GSM3417916	mock infected fibroblasts Mock_24h_1	lung fibroblast cell line  [MRC-5 ]	24 hrs	mock	Uninfected
GSM3417917	mock infected fibroblasts Mock_24h_2	lung fibroblast cell line  [MRC-5 ]	24 hrs	mock	Uninfected
GSM3417918	ADV infected fibroblasts Ad5_1	lung fibroblast cell line  [MRC-5 ]	24 hrs	ADV type 5	Human mastadenovirus C
GSM3417919	ADV infected fibroblasts Ad5_2	lung fibroblast cell line  [MRC-5 ]	24 hrs	ADV type 5	Human mastadenovirus C
GSM3417920	mock infected fibroblasts NT-LNA_Mock_1	foreskin fibroblast cell line	48 hrs	mock	Uninfected	Extra interventions "NT LNA" treated
GSM3417921	mock infected fibroblasts NT-LNA_Mock_2	foreskin fibroblast cell line	48 hrs	mock	Uninfected	Extra interventions "NT LNA" treated
GSM3417922	CMV infected fibroblasts NT-LNA_HCMV_1	foreskin fibroblast cell line	48 hrs	CMV/TB40	Human betaherpesvirus 5	Extra interventions "NT LNA" treated
GSM3417923	CMV infected fibroblasts NT-LNA_HCMV_2	foreskin fibroblast cell line	48 hrs	CMV/TB40	Human betaherpesvirus 5	Extra interventions "NT LNA" treated
GSM3417924	mock infected fibroblasts HSII-LNA_Mock_1	foreskin fibroblast cell line	48 hrs	mock	Uninfected	Extra interventions "HSATII LNA"
GSM3417925	mock infected fibroblasts HSII-LNA_Mock_2	foreskin fibroblast cell line	48 hrs	mock	Uninfected	Extra interventions "HSATII LNA"
GSM3417926	CMV infected fibroblasts HSII-LNA_HCMV_1	foreskin fibroblast cell line	48 hrs	CMV/TB40	Human betaherpesvirus 5	Extra interventions "HSATII LNA"
GSM3417927	CMV infected fibroblasts HSII-LNA_HCMV_2	foreskin fibroblast cell line	48 hrs	CMV/TB40	Human betaherpesvirus 5	Extra interventions "HSATII LNA"