Virus Expression Database
Submitted by Aaron F Carlin (San Diego, USA) on Dec 10 2018
Platform: ngs – Illumina HiSeq 2000 (Homo sapiens)
Pubmed: 30596671
Summary A longitudinal systems immunologic investigation of acute Zika virus infection in an individual infected with ZIKV while traveling to Caracas, Venezuela during the zika virus epidemic. Includes longitudinal RNA-seq and ATAC-seq characterization of innate and adaptive immune responses during an acute ZIKV infection.
| ID | Title | Cell Type | Timepoint | Reported Virus | Virus Species | Exclusion Reason |
|---|---|---|---|---|---|---|
| GSM3506299 | CD14dimCD16pos-Day03 | monocyte  |
3 days | Zika virus | Data failed QCpct_pseudoaligned is 15.1% (low fraction of usable reads) |
|
| GSM3506300 | CD14dimCD16pos-Day06 | monocyte |
6 days | Zika virus | Data failed QCpct_pseudoaligned is 16.8% (low fraction of usable reads) |
|
| GSM3506301 | CD14dimCD16pos-Day17 | monocyte |
17 days | Zika virus | Data failed QCpct_pseudoaligned is 16.3% (low fraction of usable reads) |
|
| GSM3506302 | CD14dimCD16pos-Day48 | monocyte |
48 days | Zika virus | Data failed QCpct_pseudoaligned is 11.1% (low fraction of usable reads) |
|
| GSM3506303 | CD14posCD16neg-Day03 | monocyte |
3 days | Zika virus | Data failed QCpct_pseudoaligned is 10.6% (low fraction of usable reads) |
|
| GSM3506304 | CD14posCD16neg-Day06 | monocyte |
6 days | Zika virus | Data failed QCpct_pseudoaligned is 13.7% (low fraction of usable reads) |
|
| GSM3506305 | CD14posCD16neg-Day17 | monocyte |
17 days | Zika virus | Data failed QCpct_pseudoaligned is 13.7% (low fraction of usable reads) |
|
| GSM3506306 | CD14posCD16neg-Day48 | monocyte |
48 days | Zika virus | Data failed QCpct_pseudoaligned is 11.4% (low fraction of usable reads) |
|
| GSM3506307 | CD14posCD16pos-Day03 | monocyte |
3 days | Zika virus | Data failed QCpct_pseudoaligned is 10.8% (low fraction of usable reads) |
|
| GSM3506308 | CD14posCD16pos-Day06 | monocyte |
6 days | Zika virus | Data failed QCpct_pseudoaligned is 14.3% (low fraction of usable reads) |
|
| GSM3506309 | CD14posCD16pos-Day17 | monocyte |
17 days | Zika virus | Data failed QCpct_pseudoaligned is 11.5% (low fraction of usable reads) |
|
| GSM3506310 | CD14posCD16pos-Day48 | monocyte |
48 days | Zika virus | Data failed QCpct_pseudoaligned is 9.0% (low fraction of usable reads) |
|
| GSM3506311 | CD4Tcell-Day03 | helper T-lymphocyte |
3 days | Zika virus | Data failed QCpct_pseudoaligned is 13.0% (low fraction of usable reads) |
|
| GSM3506312 | CD4Tcell-Day06 | helper T-lymphocyte |
6 days | Zika virus | Data failed QCpct_pseudoaligned is 10.9% (low fraction of usable reads) |
|
| GSM3506313 | CD4Tcell-Day17 | helper T-lymphocyte |
17 days | Zika virus | Data failed QCpct_pseudoaligned is 8.5% (low fraction of usable reads) |
|
| GSM3506314 | CD4Tcell-Day48 | helper T-lymphocyte |
48 days | Zika virus | Data failed QCpct_pseudoaligned is 8.1% (low fraction of usable reads) |
|
| GSM3506315 | CD8Tcell-Day03 | cytotoxic T-lymphocyte |
3 days | Zika virus | Data failed QCpct_pseudoaligned is 11.0% (low fraction of usable reads) |
|
| GSM3506316 | CD8Tcell-Day06 | cytotoxic T-lymphocyte |
6 days | Zika virus | Data failed QCpct_pseudoaligned is 11.9% (low fraction of usable reads) |
|
| GSM3506317 | CD8Tcell-Day17 | cytotoxic T-lymphocyte |
17 days | Zika virus | Data failed QCpct_pseudoaligned is 9.5% (low fraction of usable reads) |
|
| GSM3506318 | CD8Tcell-Day48 | cytotoxic T-lymphocyte |
48 days | Zika virus | Data failed QCpct_pseudoaligned is 10.6% (low fraction of usable reads) |
|
| GSM3506319 | MyeloidDC-Day03 | myeloid dendritic cell |
3 days | Zika virus | Data failed QCpct_pseudoaligned is 11.6% (low fraction of usable reads) |
|
| GSM3506320 | MyeloidDC-Day06 | myeloid dendritic cell |
6 days | Zika virus | Data failed QCpct_pseudoaligned is 8.9% (low fraction of usable reads) |
|
| GSM3506321 | MyeloidDC-Day17 | myeloid dendritic cell |
17 days | Zika virus | Data failed QCpct_pseudoaligned is 11.3% (low fraction of usable reads) |
|
| GSM3506322 | MyeloidDC-Day48 | myeloid dendritic cell |
48 days | Zika virus | Data failed QCpct_pseudoaligned is 8.6% (low fraction of usable reads) |
|
| GSM3506323 | NK-Day03 | natural killer cell |
3 days | Zika virus | Data failed QCpct_pseudoaligned is 13.2% (low fraction of usable reads) |
|
| GSM3506324 | NK-Day06 | natural killer cell |
6 days | Zika virus | Data failed QCpct_pseudoaligned is 14.7% (low fraction of usable reads) |
|
| GSM3506325 | NK-Day17 | natural killer cell |
17 days | Zika virus | Data failed QCpct_pseudoaligned is 11.8% (low fraction of usable reads) |
|
| GSM3506326 | NK-Day48 | natural killer cell |
48 days | Zika virus | Data failed QCpct_pseudoaligned is 9.3% (low fraction of usable reads) |
|
| GSM3506327 | PBMC-Day03 | peripheral blood mononuclear cell |
3 days | Zika virus | Data failed QCpct_pseudoaligned is 6.1% (low fraction of usable reads) |
|
| GSM3506328 | PBMC-Day06 | peripheral blood mononuclear cell |
6 days | Zika virus | Data failed QCpct_pseudoaligned is 6.3% (low fraction of usable reads) |
|
| GSM3506329 | PBMC-Day17 | peripheral blood mononuclear cell |
17 days | Zika virus | Data failed QCpct_pseudoaligned is 5.7% (low fraction of usable reads) |
|
| GSM3506330 | PBMC-Day48 | peripheral blood mononuclear cell |
48 days | Zika virus | Data failed QCpct_pseudoaligned is 9.9% (low fraction of usable reads) |
|
| GSM3506331 | PlasmacytoidDC-Day03 | plasmacytoid dendritic cell |
3 days | Zika virus | Data failed QCpct_pseudoaligned is 8.2% (low fraction of usable reads) |
|
| GSM3506332 | PlasmacytoidDC-Day06 | plasmacytoid dendritic cell |
6 days | Zika virus | Data failed QCpct_pseudoaligned is 7.7% (low fraction of usable reads) |
|
| GSM3506333 | PlasmacytoidDC-Day48 | plasmacytoid dendritic cell |
48 days | Zika virus | Data failed QCpct_pseudoaligned is 4.1% (low fraction of usable reads) |