Virus Expression Database
Submitted by yanhua du (tongji university, China) on Apr 02 2019
Platform: ngs – Illumina HiSeq 2500 (Homo sapiens)
Pubmed: 30952992
Summary To investigate the cellular pathologies in human NPCs after ZIKV infection, we performed global transcriptome profiling of the FD, FV, and H&S organoids at 3 and 6 dpi. We found 105 upregulated genes in the FD NPCs, 60 genes in the FV NPCs, and 168 genes in the H&S NPCs, with at least 1.5-fold differences found between ZIKV-infected groups and the control groups at 6 dpi. Among them, 28 genes overlapped in all three regional NPCs. These 28 common genes exclusively referred to the pathways associated with immune responses to viral infection, which could be clustered to the ISG family.
| ID | Title | Cell Type | Timepoint | Reported Virus | Virus Species | Exclusion Reason |
|---|---|---|---|---|---|---|
| GSM3702004 | FD6_1 | neural stem cell  |
none | Uninfected | ||
| GSM3702005 | FD6_2 | neural stem cell |
none | Uninfected | ||
| GSM3702006 | FDz6_1 | neural stem cell |
6 days | ZIKV | Zika virus | |
| GSM3702007 | FDz6_2 | neural stem cell |
6 days | ZIKV | Zika virus | |
| GSM3702008 | H&S6_1 | neural stem cell |
none | Uninfected | ||
| GSM3702009 | H&S6_2 | neural stem cell |
none | Uninfected | ||
| GSM3702010 | H&Sz6_1 | neural stem cell |
6 days | ZIKV | Zika virus | |
| GSM3702011 | H&Sz6_2 | neural stem cell |
6 days | ZIKV | Zika virus | |
| GSM3702012 | FV6_1 | neural stem cell |
none | Uninfected | ||
| GSM3702013 | FV6_2 | neural stem cell |
none | Uninfected | ||
| GSM3702014 | FVz6_1 | neural stem cell |
6 days | ZIKV | Zika virus | |
| GSM3702015 | FVz6_2 | neural stem cell |
6 days | ZIKV | Zika virus | |
| GSM3702016 | FD3_1 | neural stem cell |
none | Uninfected | ||
| GSM3702017 | FD3_2 | neural stem cell |
none | Uninfected | ||
| GSM3702018 | FDz3_1 | neural stem cell |
3 days | ZIKV | Zika virus | |
| GSM3702019 | H&S3_1 | neural stem cell |
none | Uninfected | ||
| GSM3702020 | H&S3_2 | neural stem cell |
none | Uninfected | ||
| GSM3702021 | H&Sz3_1 | neural stem cell |
3 days | ZIKV | Zika virus | |
| GSM3702022 | H&Sz3_2 | neural stem cell |
3 days | ZIKV | Zika virus | |
| GSM3702023 | FV3_1 | neural stem cell |
none | Uninfected | ||
| GSM3702024 | FV3_2 | neural stem cell |
none | Uninfected | ||
| GSM3702025 | FVz3_1 | neural stem cell |
3 days | ZIKV | Zika virus | |
| GSM3702026 | FVz3_2 | neural stem cell |
3 days | ZIKV | Zika virus |