Virus Expression Database
Submitted by Walter Atwood (Brown University, USA) on Aug 14 2019
Platform: ngs – Illumina HiSeq 2000 (Homo sapiens)
Summary JC polyomavirus (JCPyV) established a persistent infection, but BK polyomavirus (BKPyV) killed the cells in 15 days. To identify the cellular factors responsible for controlling JCPyV infection and promoting viral persistence, we profiled the transcriptomes of JCPyV- and BKPyV-infected cells at several time points postinfection. We found that interferon-stimulated genes (ISGs) were only activated in the JCPyV and not in the BKPyV-infected cells.
| ID | Title | Cell Type | Timepoint | Reported Virus | Virus Species | Exclusion Reason |
|---|---|---|---|---|---|---|
| GSM4034946 | BK infected cells at 3 days post infection replicate 1 [BK3DPI1] | renal epithelial cell  |
3 days | BKPyV | Human polyomavirus 1 | |
| GSM4034947 | BK infected cells at 3 days post infection replicate 2 [BK3DPI2] | renal epithelial cell |
3 days | BKPyV | Human polyomavirus 1 | |
| GSM4034948 | BK infected cells at 3 days post infection replicate 3 [BK3DPI3] | renal epithelial cell |
3 days | BKPyV | Human polyomavirus 1 | |
| GSM4034949 | BK infected cells at 6 days post infection replicate 1 [BK6DPI1] | renal epithelial cell |
6 days | BKPyV | Human polyomavirus 1 | |
| GSM4034950 | BK infected cells at 6 days post infection replicate 2 [BK6DPI2] | renal epithelial cell |
6 days | BKPyV | Human polyomavirus 1 | |
| GSM4034951 | BK infected cells at 6 days post infection replicate 3 [BK6DPI3] | renal epithelial cell |
6 days | BKPyV | Human polyomavirus 1 | |
| GSM4034952 | BK infected cells at 9 days post infection replicate 1 [BK9DPI1] | renal epithelial cell |
9 days | BKPyV | Human polyomavirus 1 | |
| GSM4034953 | BK infected cells at 9 days post infection replicate 2 [BK9DPI2] | renal epithelial cell |
9 days | BKPyV | Human polyomavirus 1 | |
| GSM4034954 | BK infected cells at 9 days post infection replicate 3 [BK9DPI3] | renal epithelial cell |
9 days | BKPyV | Human polyomavirus 1 | |
| GSM4034955 | JC infected cells at 3 days post infection replicate 1 [JC3DPI1] | renal epithelial cell |
3 days | JCPyV | Human polyomavirus 2 | |
| GSM4034956 | JC infected cells at 3 days post infection replicate 2 [JC3DPI2] | renal epithelial cell |
3 days | JCPyV | Human polyomavirus 2 | |
| GSM4034957 | JC infected cells at 3 days post infection replicate 3 [JC3DPI3] | renal epithelial cell |
3 days | JCPyV | Human polyomavirus 2 | |
| GSM4034958 | JC infected cells at 6 days post infection replicate 1 [JC6DPI1] | renal epithelial cell |
6 days | JCPyV | Human polyomavirus 2 | |
| GSM4034959 | JC infected cells at 6 days post infection replicate 2 [JC6DPI2] | renal epithelial cell |
6 days | JCPyV | Human polyomavirus 2 | |
| GSM4034960 | JC infected cells at 6 days post infection replicate 3 [JC6DPI3] | renal epithelial cell |
6 days | JCPyV | Human polyomavirus 2 | |
| GSM4034961 | JC infected cells at 9 days post infection replicate 1 [JC9DPI1] | renal epithelial cell |
9 days | JCPyV | Human polyomavirus 2 | |
| GSM4034962 | JC infected cells at 9 days post infection replicate 2 [JC9DPI2] | renal epithelial cell |
9 days | JCPyV | Human polyomavirus 2 | |
| GSM4034963 | JC infected cells at 9 days post infection replicate 3 [JC9DPI3] | renal epithelial cell |
9 days | JCPyV | Human polyomavirus 2 | |
| GSM4034964 | Uninfected control cells at 3 days post infection replicate 1 [UI3DPI1] | renal epithelial cell |
3 days | Uninfected | ||
| GSM4034965 | Uninfected control cells at 3 days post infection replicate 2 [UI3DPI2] | renal epithelial cell |
3 days | Uninfected | ||
| GSM4034966 | Uninfected control cells at 3 days post infection replicate 3 [UI3DPI3] | renal epithelial cell |
3 days | Uninfected | ||
| GSM4034967 | Uninfected control cells at 6 days post infection replicate 1 [UI6DPI1] | renal epithelial cell |
6 days | Uninfected | ||
| GSM4034968 | Uninfected control cells at 6 days post infection replicate 2 [UI6DPI2] | renal epithelial cell |
6 days | Uninfected | ||
| GSM4034969 | Uninfected control cells at 6 days post infection replicate 3 [UI6DPI3] | renal epithelial cell |
6 days | Uninfected | ||
| GSM4034970 | Uninfected control cells at 9 days post infection replicate 1 [UI9DPI1] | renal epithelial cell |
9 days | Uninfected | ||
| GSM4034971 | Uninfected control cells at 9 days post infection replicate 2 [UI9DPI2] | renal epithelial cell |
9 days | Uninfected | ||
| GSM4034972 | Uninfected control cells at 9 days post infection replicate 3 [UI9DPI3] | renal epithelial cell |
9 days | Uninfected |