Virus Expression Database

GSE165461

The expansion of unconventional CD56dim CD16neg cells is a hallmark of the natural killer cell population in COVID-19

Submitted by Galam Leem (KAIST, South Korea) on Jan 25 2021

Platform: ngs – Illumina NextSeq 500 (Homo sapiens)

Pubmed: None listed

Summary Natural killer (NK) cells of healthy donors and COVID-19

72 Samples

ID Title Cell Type Timepoint Reported Virus Virus Species Exclusion Reason
GSM5034149 Healthy_CSJ natural killer cell  Healthy Uninfected
GSM5034150 Healthy_JSJ natural killer cell  Healthy Uninfected
GSM5034151 Healthy_KJG natural killer cell  Healthy Uninfected
GSM5034152 Healthy_LJS natural killer cell  Healthy Uninfected
GSM5034153 Healthy_PSH natural killer cell  Healthy Uninfected
GSM5034154 Healthy_SEC natural killer cell  Healthy Uninfected
GSM5034155 Healthy_SIH natural killer cell  Healthy Uninfected
GSM5034156 Healthy_SJ natural killer cell  Healthy Uninfected
GSM5034157 Mild_JHY_05 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034158 Mild_JHY_13 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034159 Mild_JHY_17 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034160 Mild_KHJ_01 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034161 Mild_KHJ_07 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034162 Mild_KHJ_21 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034163 Mild_KHS_01 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034164 Mild_KHS_07 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034165 Mild_KHS_20 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034166 Mild_KimYS_01 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034167 Mild_KimYS_07 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034168 Mild_KimYS_14 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034169 Mild_KoYS_01 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034170 Mild_KoYS_07 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034171 Mild_KoYS_14 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034172 Mild_KYM_03 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034173 Mild_KYM_10 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034174 Mild_KYM_17 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034175 Mild_LSM_01 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034176 Mild_LSM_07 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034177 Mild_LSM_14 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034178 Mild_PHS_01 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034179 Mild_PHS_07 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034180 Mild_PHS_14 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034181 Mild_SWK_01 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034182 Mild_SWK_07 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034183 Mild_SWK_24 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034184 Mild_YCJ_01 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034185 Mild_YCJ_07 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034186 Mild_YCJ_14 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034187 Mild_YKS_01 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034188 Mild_YKS_07 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034189 Mild_YKS_13 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034190 Mild_YSH_01 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034191 Mild_YSH_07 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034192 Mild_YSH_14 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034193 Mild_YTY_01 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034194 Mild_YTY_07 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034195 Mild_YTY_14 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034196 Severe_CHR_08 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034197 Severe_CHR_14 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034198 Severe_CHR_23 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034199 Severe_KC_03 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034200 Severe_KC_07 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034201 Severe_KC_23 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034202 Severe_KDS_05 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034203 Severe_KDS_10 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034204 Severe_KDS_24 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034205 Severe_KYJ_10 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034206 Severe_KYJ_18 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034207 Severe_KYJ_27 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034208 Severe_LHD_05 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034209 Severe_LHD_10 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034210 Severe_LHD_24 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034211 Severe_LNK_05 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034212 Severe_LNK_13 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034213 Severe_LNK_24 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034214 Severe_SJY_05 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034215 Severe_SJY_10 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus
GSM5034216 Severe_SJY_19 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus Data failed QC
pct_pseudoaligned is 17.9% (low fraction of usable reads)
GSM5034217 Severe_SJY_26 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus Data failed QC
pct_pseudoaligned is 17.7% (low fraction of usable reads)
GSM5034218 Severe_SYH_05 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus Data failed QC
pct_pseudoaligned is 17.8% (low fraction of usable reads)
GSM5034219 Severe_SYH_17 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus Data failed QC
pseudoaligned_reads is 796194 (low number of usable reads)
pct_pseudoaligned is 4.0% (low fraction of usable reads)
GSM5034220 Severe_SYH_23 natural killer cell  COVID-19 Severe acute respiratory syndrome-related coronavirus