Virus Expression Database
Submitted by Geoffrey S Ginsburg (Duke Institute for Genome Sciences & Policy, USA) on Jul 16 2009
Platform: microarray – [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array
Pubmed: 19664979
Summary Diagnosis of acute respiratory viral infection is currentlybased on clinical symptoms and pathogen detection. Use of host peripheral blood gene expression data to classify individuals with viral respiratory infection represents a novel means of infection diagnosis.
We used microarrays to capture peripheral blood gene expression at baseline and time of peak symptoms in healthy volunteers infected intranasally with influenza A H3N2, respiratory syncytial virus or rhinovirus. We determined groups of coexpressed genes that accurately classified symptomatic versus asymptomatic individuals.
| ID | Title | Cell Type | Timepoint | Reported Virus | Virus Species | Exclusion Reason |
|---|---|---|---|---|---|---|
| GSM429202 | rhinovirus challenge sample at baseline_Rhino001 | peripheral blood  |
rhinovirus | Uninfected | ||
| GSM429203 | rhinovirus challenge sample at T_Rhino001 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429204 | rhinovirus challenge sample at baseline_Rhino002 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429205 | rhinovirus challenge sample at T_Rhino002 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429206 | rhinovirus challenge sample at baseline_Rhino003 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429207 | rhinovirus challenge sample at T_Rhino003 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429208 | rhinovirus challenge sample at baseline_Rhino004 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429209 | rhinovirus challenge sample at T_Rhino004 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429210 | rhinovirus challenge sample at baseline_Rhino005 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429211 | rhinovirus challenge sample at T_Rhino005 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429212 | rhinovirus challenge sample at baseline_Rhino006 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429213 | rhinovirus challenge sample at T_Rhino006 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429214 | rhinovirus challenge sample at baseline_Rhino007 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429215 | rhinovirus challenge sample at T_Rhino007 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429216 | rhinovirus challenge sample at baseline_Rhino008 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429217 | rhinovirus challenge sample at T_Rhino008 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429218 | rhinovirus challenge sample at baseline_Rhino009 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429219 | rhinovirus challenge sample at T_Rhino009 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429220 | rhinovirus challenge sample at baseline_Rhino010 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429221 | rhinovirus challenge sample at T_Rhino010 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429222 | rhinovirus challenge sample at baseline_Rhino011 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429223 | rhinovirus challenge sample at T_Rhino011 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429224 | rhinovirus challenge sample at baseline_Rhino012 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429225 | rhinovirus challenge sample at T_Rhino012 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429226 | rhinovirus challenge sample at baseline_Rhino013 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429227 | rhinovirus challenge sample at T_Rhino013 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429228 | rhinovirus challenge sample at baseline_Rhino014 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429229 | rhinovirus challenge sample at T_Rhino014 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429230 | rhinovirus challenge sample at baseline_Rhino015 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429231 | rhinovirus challenge sample at T_Rhino015 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429232 | rhinovirus challenge sample at T_Rhino016 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429233 | rhinovirus challenge sample at baseline_Rhino017 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429234 | rhinovirus challenge sample at T_Rhino017 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429235 | rhinovirus challenge sample at baseline_Rhino018 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429236 | rhinovirus challenge sample at T_Rhino018 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429237 | rhinovirus challenge sample at baseline_Rhino019 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429238 | rhinovirus challenge sample at T_Rhino019 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429239 | rhinovirus challenge sample at baseline_Rhino020 | peripheral blood |
rhinovirus | Uninfected | ||
| GSM429240 | rhinovirus challenge sample at T_Rhino020 | peripheral blood |
peak symptoms | rhinovirus | Rhinovirus A | |
| GSM429241 | respiratory syncytial virus challenge sample at baseline_RSV001 | peripheral blood |
RSV | Uninfected | ||
| GSM429242 | respiratory syncytial virus challenge sample at T_RSV001 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429243 | respiratory syncytial virus challenge sample at baseline_RSV002 | peripheral blood |
RSV | Uninfected | ||
| GSM429244 | respiratory syncytial virus challenge sample at T_RSV002 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429245 | respiratory syncytial virus challenge sample at baseline_RSV003 | peripheral blood |
RSV | Uninfected | ||
| GSM429246 | respiratory syncytial virus challenge sample at T_RSV003 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429247 | respiratory syncytial virus challenge sample at baseline_RSV004 | peripheral blood |
RSV | Uninfected | ||
| GSM429248 | respiratory syncytial virus challenge sample at T_RSV004 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429249 | respiratory syncytial virus challenge sample at baseline_RSV005 | peripheral blood |
RSV | Uninfected | ||
| GSM429250 | respiratory syncytial virus challenge sample at T_RSV005 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429251 | respiratory syncytial virus challenge sample at baseline_RSV006 | peripheral blood |
RSV | Uninfected | ||
| GSM429252 | respiratory syncytial virus challenge sample at T_RSV006 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429253 | respiratory syncytial virus challenge sample at baseline_RSV007 | peripheral blood |
RSV | Uninfected | ||
| GSM429254 | respiratory syncytial virus challenge sample at T_RSV007 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429255 | respiratory syncytial virus challenge sample at baseline_RSV008 | peripheral blood |
RSV | Uninfected | ||
| GSM429256 | respiratory syncytial virus challenge sample at T_RSV008 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429257 | respiratory syncytial virus challenge sample at baseline_RSV009 | peripheral blood |
RSV | Uninfected | ||
| GSM429258 | respiratory syncytial virus challenge sample at T_RSV009 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429259 | respiratory syncytial virus challenge sample at baseline_RSV010 | peripheral blood |
RSV | Uninfected | ||
| GSM429260 | respiratory syncytial virus challenge sample at T_RSV010 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429261 | respiratory syncytial virus challenge sample at baseline_RSV011 | peripheral blood |
RSV | Uninfected | ||
| GSM429262 | respiratory syncytial virus challenge sample at T_RSV011 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429263 | respiratory syncytial virus challenge sample at baseline_RSV012 | peripheral blood |
RSV | Uninfected | ||
| GSM429264 | respiratory syncytial virus challenge sample at T_RSV012 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429265 | respiratory syncytial virus challenge sample at baseline_RSV013 | peripheral blood |
RSV | Uninfected | ||
| GSM429266 | respiratory syncytial virus challenge sample at T_RSV013 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429267 | respiratory syncytial virus challenge sample at baseline_RSV014 | peripheral blood |
RSV | Uninfected | ||
| GSM429268 | respiratory syncytial virus challenge sample at T_RSV014 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429269 | respiratory syncytial virus challenge sample at baseline_RSV015 | peripheral blood |
RSV | Uninfected | ||
| GSM429270 | respiratory syncytial virus challenge sample at T_RSV015 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429271 | respiratory syncytial virus challenge sample at baseline_RSV016 | peripheral blood |
RSV | Uninfected | ||
| GSM429272 | respiratory syncytial virus challenge sample at T_RSV016 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429273 | respiratory syncytial virus challenge sample at baseline_RSV017 | peripheral blood |
RSV | Uninfected | ||
| GSM429274 | respiratory syncytial virus challenge sample at T_RSV017 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429275 | respiratory syncytial virus challenge sample at baseline_RSV018 | peripheral blood |
RSV | Uninfected | ||
| GSM429276 | respiratory syncytial virus challenge sample at T_RSV018 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429277 | respiratory syncytial virus challenge sample at baseline_RSV019 | peripheral blood |
RSV | Uninfected | ||
| GSM429278 | respiratory syncytial virus challenge sample at T_RSV019 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429279 | respiratory syncytial virus challenge sample at baseline_RSV020 | peripheral blood |
RSV | Uninfected | ||
| GSM429280 | respiratory syncytial virus challenge sample at T_RSV020 | peripheral blood |
peak symptoms | RSV | Human orthopneumovirus | |
| GSM429281 | Influenza A H3N2 challenge sample at baseline_Flu001 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429282 | Influenza A H3N2 challenge sample at T_Flu001 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus | |
| GSM429283 | Influenza A H3N2 challenge sample at baseline_Flu002 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429284 | Influenza A H3N2 challenge sample at T_Flu002 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus | |
| GSM429285 | Influenza A H3N2 challenge sample at baseline_Flu003 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429286 | Influenza A H3N2 challenge sample at T_Flu003 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus | |
| GSM429287 | Influenza A H3N2 challenge sample at baseline_Flu004 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429288 | Influenza A H3N2 challenge sample at T_Flu004 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus | |
| GSM429289 | Influenza A H3N2 challenge sample at baseline_Flu005 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429290 | Influenza A H3N2 challenge sample at T_Flu005 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus | |
| GSM429291 | Influenza A H3N2 challenge sample at baseline_Flu006 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429292 | Influenza A H3N2 challenge sample at T_Flu006 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus | |
| GSM429293 | Influenza A H3N2 challenge sample at baseline_Flu007 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429294 | Influenza A H3N2 challenge sample at T_Flu007 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus | |
| GSM429295 | Influenza A H3N2 challenge sample at baseline_Flu008 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429296 | Influenza A H3N2 challenge sample at T_Flu008 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus | |
| GSM429297 | Influenza A H3N2 challenge sample at baseline_Flu009 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429298 | Influenza A H3N2 challenge sample at T_Flu009 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus | |
| GSM429299 | Influenza A H3N2 challenge sample at baseline_Flu010 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429300 | Influenza A H3N2 challenge sample at T_Flu010 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus | |
| GSM429301 | Influenza A H3N2 challenge sample at baseline_Flu011 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429302 | Influenza A H3N2 challenge sample at T_Flu011 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus | |
| GSM429303 | Influenza A H3N2 challenge sample at baseline_Flu012 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429304 | Influenza A H3N2 challenge sample at T_Flu012 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus | |
| GSM429305 | Influenza A H3N2 challenge sample at baseline_Flu013 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429306 | Influenza A H3N2 challenge sample at T_Flu013 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus | |
| GSM429307 | Influenza A H3N2 challenge sample at baseline_Flu014 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429308 | Influenza A H3N2 challenge sample at T_Flu014 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus | |
| GSM429309 | Influenza A H3N2 challenge sample at baseline_Flu015 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429310 | Influenza A H3N2 challenge sample at T_Flu015 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus | |
| GSM429311 | Influenza A H3N2 challenge sample at baseline_Flu016 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429312 | Influenza A H3N2 challenge sample at T_Flu016 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus | |
| GSM429313 | Influenza A H3N2 challenge sample at baseline_Flu017 | peripheral blood |
Influenza A H3N2 | Uninfected | ||
| GSM429314 | Influenza A H3N2 challenge sample at T_Flu017 | peripheral blood |
peak symptoms | Influenza A H3N2 | Influenza A virus |