Virus Expression Database

GSE38720

Time series data of HCV (JC1) infection of Huh7 cells

Submitted by Kumaran Kandasamy (Center for Molecular Medicine, Austria) on Jun 14 2012

Platform: microarray – [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array

Pubmed: 22810585

Summary Huh7/5-2 cells (Binder et al., Hepatology 2007) were mock infected (DMEM) (time points 4 and 48 h) or infected with the chimeric HCV virus Jc1 (Pietschmann et al., PNAS 2006) (all time points).
Multiplicity of infection was 15 (TCID50). Cells were lysed after 4, 12, 24, 48 and 72 hours post infection and total cellular RNA was prepared.

14 Samples

ID Title Cell Type Timepoint Reported Virus Virus Species Exclusion Reason
GSM948651 Huh7/5-2 uninfected 4 h biological replicate 1 hepatoma cell line  4 hrs mock Uninfected
GSM948652 Huh7/5-2 uninfected 4 h biological replicate 2 hepatoma cell line  4 hrs mock Uninfected
GSM948653 Huh7/5-2 infected 4 h biological replicate 1 hepatoma cell line  4 hrs chimeric HCV virus Jc1 Hepacivirus C
GSM948654 Huh7/5-2 infected 4 h biological replicate 2 hepatoma cell line  4 hrs chimeric HCV virus Jc1 Hepacivirus C
GSM948655 Huh7/5-2 infected 12 h biological replicate 1 hepatoma cell line  12 hrs chimeric HCV virus Jc1 Hepacivirus C
GSM948656 Huh7/5-2 infected 12 h biological replicate 2 hepatoma cell line  12 hrs chimeric HCV virus Jc1 Hepacivirus C
GSM948657 Huh7/5-2 infected 24 h biological replicate 1 hepatoma cell line  24 hrs chimeric HCV virus Jc1 Hepacivirus C
GSM948658 Huh7/5-2 infected 24 h biological replicate 2 hepatoma cell line  24 hrs chimeric HCV virus Jc1 Hepacivirus C
GSM948659 Huh7/5-2 uninfected 48 h biological replicate 1 hepatoma cell line  48 hrs mock Uninfected
GSM948660 Huh7/5-2 uninfected 48 h biological replicate 2 hepatoma cell line  48 hrs mock Uninfected
GSM948661 Huh7/5-2 infected 48 h biological replicate 1 hepatoma cell line  48 hrs chimeric HCV virus Jc1 Hepacivirus C
GSM948662 Huh7/5-2 infected 48 h biological replicate 2 hepatoma cell line  48 hrs chimeric HCV virus Jc1 Hepacivirus C
GSM948663 Huh7/5-2 infected 72 h biological replicate 1 hepatoma cell line  72 hrs chimeric HCV virus Jc1 Hepacivirus C
GSM948664 Huh7/5-2 infected 72 h biological replicate 2 hepatoma cell line  72 hrs chimeric HCV virus Jc1 Hepacivirus C