Submitted by Kasper Daniel Hansen (Johns Hopkins, USA) on Aug 07 2013
Platform: microarray – [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Summary To determine what DNA methylation and gene expression changes occur following EBV transformation. B-cells were isolated from 3 donors. Resting, CD40 activated and EBV transfromed cells from each donor was analyzed. Each sample was assayed using Affymetrix expression arrays and whole genome bisulfite sequenicng. Additional time points during transformation and activation were sequenced as well, but not assayed for expression.
ID | Title | Cell Type | Timepoint | Reported Virus | Virus Species | Exclusion Reason |
---|---|---|---|---|---|---|
GSM1202819 | Bcells-Activation-B1 | B-lymphocyte ![]() |
uninfected | Uninfected | Extra interventions CD40 activated |
|
GSM1202820 | Bcells-Quiescent-B1 | B-lymphocyte ![]() |
uninfected | Uninfected | ||
GSM1202821 | Bcells-EBV_Transformed_B1 | B-lymphocyte ![]() |
EBV | Human gammaherpesvirus 4 | ||
GSM1202822 | Bcells-Activation-B2 | B-lymphocyte ![]() |
uninfected | Uninfected | Extra interventions CD40 activated |
|
GSM1202823 | Bcells-Quiescent-B2 | B-lymphocyte ![]() |
uninfected | Uninfected | ||
GSM1202824 | Bcells-EBV_Transformed_B2 | B-lymphocyte ![]() |
EBV | Human gammaherpesvirus 4 | ||
GSM1202825 | Bcells-Activation-B3 | B-lymphocyte ![]() |
uninfected | Uninfected | Extra interventions CD40 activated |
|
GSM1202826 | Bcells-Quiescent-B3 | B-lymphocyte ![]() |
uninfected | Uninfected | ||
GSM1202827 | Bcells-EBV_Transformed_B3 | B-lymphocyte ![]() |
EBV | Human gammaherpesvirus 4 |