GSE78282

Effect of LANA deletion on the host gene expression during de novo KSHV infection of SLK cells.

Submitted by Zsolt Toth (University of Florida, USA) on Feb 24 2016

Platform: microarray – [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array

Pubmed: 27606464

Summary Human SLK cells were infected with wildtype (wt) and LANA knockout (KO) Kaposi's sarcoma-associated herpesvirus (KSHV), separately for 3 days. Cellular gene expression changes were identified upon the wild type and LANA KO KSHV virus infection compared to the uninfected SLK cells using the human gene expression microarray U133plus2.0.

6 Samples

ID	Title	Cell Type	Timepoint	Reported Virus	Virus Species	Exclusion Reason
GSM2071212	Uninfected replicate A	SLK [SLK ]		none	Uninfected
GSM2071213	Uninfected replicate B	SLK [SLK ]		none	Uninfected
GSM2071214	wild type infected replicate C	SLK [SLK ]	72 hrs	KSHV	Human gammaherpesvirus 8
GSM2071215	wild type infected replicate D	SLK [SLK ]	72 hrs	KSHV	Human gammaherpesvirus 8
GSM2071216	LANA KO infected replicate E	SLK [SLK ]	72 hrs	KSHV	Human gammaherpesvirus 8	Extra interventions LANA KO
GSM2071217	LANA KO infected replicate F	SLK [SLK ]	72 hrs	KSHV	Human gammaherpesvirus 8	Extra interventions LANA KO