Virus Expression Database
Submitted by Dohun Pyeon (University of Colorado School of Medicine, USA) on Jun 13 2016
Platform: microarray – [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Pubmed: 28623356
Summary To investigate the extent of gene expression dysregulation by the human papillomavirus (HPV) oncoprotein E7, we performed global gene expression analysis on normal immortalized keratinocytes from skin (NIKS),
NIKS cells maintaining the HPV16 or 18 episomes (NIKS-16, NIKS-18, respectively), and NIKS cells maintaining the HPV-16 episome deficient in E7 expression (NIKS-16ΔE7).
| ID | Title | Cell Type | Timepoint | Reported Virus | Virus Species | Exclusion Reason |
|---|---|---|---|---|---|---|
| GSM2197772 | NIKS replicate 1 | keratinocyte cell line  |
Uninfected | |||
| GSM2197773 | NIKS replicate 2 | keratinocyte cell line |
Uninfected | |||
| GSM2197774 | NIKS replicate 3 | keratinocyte cell line |
Uninfected | |||
| GSM2197775 | NIKS HPV16-positive replicate 1 | keratinocyte cell line |
persistent | HPV16 | Alphapapillomavirus 9 | |
| GSM2197776 | NIKS HPV16-positive replicate 2 | keratinocyte cell line |
persistent | HPV16 | Alphapapillomavirus 9 | |
| GSM2197777 | NIKS HPV16-positive replicate 3 | keratinocyte cell line |
persistent | HPV16 | Alphapapillomavirus 9 | |
| GSM2197778 | NIKS HPV18-positive replicate 1 | keratinocyte cell line |
persistent | HPV18 | Alphapapillomavirus 7 | |
| GSM2197779 | NIKS HPV18-positive replicate 2 | keratinocyte cell line |
persistent | HPV18 | Alphapapillomavirus 7 | |
| GSM2197780 | NIKS HPV18-positive replicate 3 | keratinocyte cell line |
persistent | HPV18 | Alphapapillomavirus 7 | |
| GSM2197781 | NIKS HPV16-positive E7-deficient replicate 1 | keratinocyte cell line |
persistent | HPV16 | Alphapapillomavirus 9 | Extra interventions E7-deficient virus |
| GSM2197782 | NIKS HPV16-positive E7-deficient replicate 2 | keratinocyte cell line |
persistent | HPV16 | Alphapapillomavirus 9 | Extra interventions E7-deficient virus |
| GSM2197783 | NIKS HPV16-positive E7-deficient replicate 3 | keratinocyte cell line |
persistent | HPV16 | Alphapapillomavirus 9 | Extra interventions E7-deficient virus |