Submitted by Andrew Sharp (Icahn School of Medicine at Mount Sinai, USA) on Dec 16 2016
Platform: ngs – Illumina HiSeq 2000 (Homo sapiens)
Pubmed: 31234833
Summary In order to study parent-of-origin effects on gene expression, we performed RNAseq analysis (100bp single end reads) of 165 children who formed part of mother/father/child trios where genotype data was available from the HapMap and/or 1000 Genomes Projects. Based on phased genotypes at heterozygous SNP positions, we generated allelic counts for expression of the maternal and paternal alleles in each individual. This analysis reveals significant bias in the expression of the parental alleles for dozens of genes, including both previously known and novel imprinted transcripts.
ID | Title | Cell Type | Timepoint | Reported Virus | Virus Species | Exclusion Reason |
---|---|---|---|---|---|---|
GSM2431181 | HG00405 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431182 | HG00408 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431183 | HG00420 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431184 | HG00423 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431185 | HG00429 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431186 | HG00438 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431187 | HG00444 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431188 | HG00447 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431189 | HG00450 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431190 | HG00453 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431191 | HG00459 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431192 | HG00465 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431193 | HG00474 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431194 | HG00477 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431195 | HG00480 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431196 | HG00502 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431197 | HG00514 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431198 | HG00526 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431199 | HG00532 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431200 | HG00535 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431201 | HG00538 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431202 | HG00544 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431203 | HG00558 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431204 | HG00561 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431205 | HG00567 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431206 | HG00579 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431207 | HG00582 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431208 | HG00585 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431209 | HG00591 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431210 | HG00594 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431211 | HG00597 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431212 | HG00609 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431213 | HG00612 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431214 | HG00615 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431215 | HG00621 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431216 | HG00627 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431217 | HG00630 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431218 | HG00636 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431219 | HG00652 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431220 | HG00655 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431221 | HG00658 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431222 | HG00664 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431223 | HG00673 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431224 | HG00685 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431225 | HG00691 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431226 | HG00694 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431227 | HG00700 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431228 | HG00703 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431229 | HG00706 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431230 | HG00709 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431231 | NA06991 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431232 | NA06995 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431233 | NA06997 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431234 | NA07014 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431235 | NA07019 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431236 | NA07029 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431237 | NA07048 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431238 | NA07348 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431239 | NA07349 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431240 | NA10830 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431241 | NA10831 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431242 | NA10835 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431243 | NA10836 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431244 | NA10837 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431245 | NA10838 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431246 | NA10839 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431247 | NA10840 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431248 | NA10842 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431249 | NA10843 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431250 | NA10845 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431251 | NA10846 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431252 | NA10847 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431253 | NA10851 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431254 | NA10854 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431255 | NA10855 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431256 | NA10856 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431257 | NA10857 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431258 | NA10859 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431259 | NA10860 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431260 | NA10861 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431261 | NA10863 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431262 | NA10864 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431263 | NA10865 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431264 | NA12329 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431265 | NA12335 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431266 | NA12336 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431267 | NA12344 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431268 | NA12375 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431269 | NA12376 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431270 | NA12386 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431271 | NA12485 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431272 | NA12707 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431273 | NA12739 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431274 | NA12740 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431275 | NA12752 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431276 | NA12753 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431277 | NA12766 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431278 | NA12767 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431279 | NA12801 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431280 | NA12802 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431281 | NA12817 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431282 | NA12818 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431283 | NA12832 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431284 | NA12864 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431285 | NA12865 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431286 | NA12877 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431287 | NA12878 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431288 | NA18484 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431289 | NA18485 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431290 | NA18497 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431291 | NA18500 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431292 | NA18503 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431293 | NA18506 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431294 | NA18515 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431295 | NA18518 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431296 | NA18521 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431297 | NA18854 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431298 | NA18857 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431299 | NA18860 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431300 | NA18863 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431301 | NA18869 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431302 | NA18872 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431303 | NA18875 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431304 | NA18911 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431305 | NA18914 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431306 | NA18925 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431307 | NA18930 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431308 | NA18935 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431309 | NA19094 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431310 | NA19097 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431311 | NA19100 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431312 | NA19103 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431313 | NA19109 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431314 | NA19115 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431315 | NA19120 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431316 | NA19123 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431317 | NA19129 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431318 | NA19132 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431319 | NA19139 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431320 | NA19142 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431321 | NA19145 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431322 | NA19148 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431323 | NA19151 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431324 | NA19154 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431325 | NA19161 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431326 | NA19173 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431327 | NA19174 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431328 | NA19177 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431329 | NA19180 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431330 | NA19183 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431331 | NA19186 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431332 | NA19191 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431333 | NA19194 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431334 | NA19199 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431335 | NA19202 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431336 | NA19205 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431337 | NA19208 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431338 | NA19211 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431339 | NA19215 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431340 | NA19221 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431341 | NA19224 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431342 | NA19237 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431343 | NA19240 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431344 | NA19249 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 | ||
GSM2431345 | NA19258 | lymphoblastoid cell line ![]() |
immortalized | Human gammaherpesvirus 4 |