Virus Expression Database
Submitted by Ping Wu (University of Texas Medical Branch, USA) on Jan 10 2017
Platform: ngs – Illumina HiSeq 1500 (Homo sapiens)
Pubmed: 28216147
Summary Purpose: The goal of this study is to investigate the effect of Zika virus infection on neural stem cells
Methods: RNA-Seq transcriptome analysis of neural stem cells infected with Zika virus compared to mock infected
| ID | Title | Cell Type | Timepoint | Reported Virus | Virus Species | Exclusion Reason |
|---|---|---|---|---|---|---|
| GSM2452280 | K048_Control-1 | embryonic neural stem cell  |
Control | Uninfected | Data failed QCpct_pseudoaligned is 16.1% (low fraction of usable reads) |
|
| GSM2452281 | K048_Control-2 | embryonic neural stem cell |
Control | Uninfected | Data failed QCpct_pseudoaligned is 16.5% (low fraction of usable reads) |
|
| GSM2452282 | K048_Control-3 | embryonic neural stem cell |
Control | Uninfected | ||
| GSM2452283 | K048_Zika-1 | embryonic neural stem cell |
unknown | Zika | Zika virus | Data failed QCpct_pseudoaligned is 17.8% (low fraction of usable reads) |
| GSM2452284 | K048_Zika-2 | embryonic neural stem cell |
unknown | Zika | Zika virus | Data failed QCpct_pseudoaligned is 17.2% (low fraction of usable reads) |
| GSM2452285 | K048_Zika-3 | embryonic neural stem cell |
unknown | Zika | Zika virus | |
| GSM2452286 | K054_Control-1 | embryonic neural stem cell |
Control | Uninfected | ||
| GSM2452287 | K054_Control-2 | embryonic neural stem cell |
Control | Uninfected | ||
| GSM2452288 | K054_Control-3 | embryonic neural stem cell |
Control | Uninfected | ||
| GSM2452289 | K054_Zika-1 | embryonic neural stem cell |
unknown | Zika | Zika virus | |
| GSM2452290 | K054_Zika-2 | embryonic neural stem cell |
unknown | Zika | Zika virus | |
| GSM2452291 | K054_Zika-3 | embryonic neural stem cell |
unknown | Zika | Zika virus | |
| GSM2452292 | G010_Control-1 | embryonic neural stem cell |
Control | Uninfected | ||
| GSM2452293 | G010_Control-2 | embryonic neural stem cell |
Control | Uninfected | ||
| GSM2452294 | G010_Control-3 | embryonic neural stem cell |
Control | Uninfected | ||
| GSM2452295 | G010_Zika-1 | embryonic neural stem cell |
unknown | Zika | Zika virus | |
| GSM2452296 | G010_Zika-2 | embryonic neural stem cell |
unknown | Zika | Zika virus | |
| GSM2452297 | G010_Zika-3 | embryonic neural stem cell |
unknown | Zika | Zika virus |